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Pathology – Tuberculosis
Pathogen
• Mycobacterium tuberculosis, an acid-fast bacillus with a rod form. Epidemiology • The most prevalent infectious disease globally. • Causes the demise of 2 million individuals annually.
Transmission
• Respiratory transmission from an infectious individual with active pulmonary tuberculosis (TB).
Immunopathogenesis
• Inhaled bacilli are phagocytosed by alveolar macrophages, however they can persist and proliferate within these cells. Mycobacteria disseminate within macrophages in the bloodstream to oxygenated regions of the body, including the lung apices, kidneys, bones, and meninges. • Subsequent to many weeks, mycobacteria-specific CD4+ helper T-cells are activated upon MHC class II antigen presentation by macrophages. • Th1 subset helper T-cells generate IFN-γ, which activates macrophages into epithelioid macrophages that aggregate into granulomas, isolating the mycobacteria in an anoxic and acidic milieu.
• The majority of immunocompetent hosts retain the infection, resulting in scarring.
Active disease typically manifests in the elderly, malnourished, diabetic, immunosuppressed, or alcoholic individuals. Active disease may manifest as pulmonary (75%) or extrapulmonary (25%).

Presentation
• Pulmonary tuberculosis manifests as a chronic pneumonia characterized by a persistent cough, fever, night sweats, weight loss, and anorexia.
• Extrapulmonary tuberculosis may appear with meningitis, lymphadenopathy, genitourinary symptoms, or discomfort in bones or joints
.Diagnosis • Acid-fast bacilli may be detected in sputum, pleural fluid, or bronchoalveolar lavage (BAL) fluid. • Culture is the definitive inquiry, although it may require up to 12 weeks for results. Polymerase chain reaction (PCR) is applicable for the diagnosis and identification of drug-resistant strains.
Histopathology
The histopathological characteristic is necrotizing granulomatous inflammation.
Prognosis: • Following antituberculous therapy, the majority of individuals achieve complete recovery. • If left untreated, approximately fifty percent of individuals will ultimately succumb to the virus.
• Prognosis is poorer in the presence of concurrent HIV or organisms exhibiting multidrug resistance.


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Pathology- Antimicrobial agents
Antibacterial agents
Inhibitors of cellular wall biosynthesis • Disrupt peptidoglycan production. • Beta-lactams, such as penicillins and cephalosporins. • Glycopeptides, such as vancomycin and teicoplanin.

Protein synthesis inhibitors
• Bind to bacterial ribosomes and inhibit the elongation of protein chains. Aminoglycosides, such as gentamicin. • Tetracyclines, such as doxycycline. • Macrolides, such as erythromycin and clarithromycin.

Nucleic acid synthesis inhibitors
• Disrupt the production of DNA precursors or the process of DNA replication. • Sulfonamides, such as sulfamethoxazole. • Trimethoprim. • Quinolones, such as ciprofloxacin. • Rifamycins, such as rifampicin. • Nitroimidazoles, such as metronidazole.
Antiviral medications
Aciclovir is a guanosine analogue that undergoes phosphorylation by viral thymidine kinase. Aciclovir triphosphate is integrated into viral DNA, resulting in the cessation of chain replication. Ganciclovir is analogous to acyclovir, although exhibits more efficacy against cytomegalovirus (CMV). Contemporary HIV treatment employs a mix of reverse transcriptase inhibitors and protease inhibitors.
Antifungal medications
Azoles inhibit the formation of ergosterol, such as fluconazole. Polyenes disrupt the functionality of fungal cell membranes, such as amphotericin and nystatin.


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Pathology – Neoplasia
Definitions
A neoplasm is an abnormal tissue mass characterized by unregulated growth and lacking any beneficial function. The term is frequently employed interchangeably with the term tumor, which denotes a swelling.

Benign neoplasms typically have a gradual development rate and remain localized to their site of origin. While benign neoplasms typically follow a harmless trajectory, they may pose risks if they exert pressure on essential adjacent structures or if they emit hormones indiscriminately.
Malignant neoplasms possess the ability to disseminate or metastasis to remote locations, resulting in new tumors known as metastases, which can proliferate independently of the initial tumor.
Cancer is an overarching word for any malignant neoplasm.
Nomenclature of neoplasms
Epithelial neoplasms
Benign neoplasms of squamous epithelium are termed acanthomas when flat and papillomas when exhibiting branching fronds.
Benign neoplasms of glandular epithelium are referred to as adenomas.
Epithelial malignancies are classified as carcinomas.
Carcinomas exhibiting squamous differentiation are termed squamous cell carcinomas. Carcinomas exhibiting glandular differentiation are termed adenocarcinomas. Carcinomas frequently follow a stage of epithelial dysplasia, characterized by the presence of neoplastic cells inside the epithelium, without penetration beyond the epithelial boundaries.

Neoplasms of connective tissue Lipoma is a benign adipose tissue tumor. • Leiomyoma is a benign neoplasm of smooth muscle. • Rhabdomyoma is a benign neoplasm of skeletal muscle. • Angioma is a benign vascular neoplasm. • Osteoma is a benign osseous neoplasm. Liposarcoma is a malignant tumor of adipose tissue. Leiomyosarcoma is a malignant neoplasm of smooth muscle tissue. • Rhabdomyosarcoma is a malignant neoplasm of skeletal muscle. • Angiosarcoma is a malignant neoplasm of vascular tissue. • Osteosarcoma is a malignant neoplasm of bone.
Alternative neoplasm classifications Lymphomas, leukemias, and myeloma are hematological malignancies originating from blood or bone marrow cells.
Malignant melanoma is a tumor of malignant melanocytes. Malignant mesothelioma is a neoplastic mesothelial tumor. Germ cell tumors constitute a heterogeneous category of neoplasms that typically originate in the testes or ovaries. Embryonal tumors are a category of malignant neoplasms primarily observed in children, characterized by highly undifferentiated cells, such as neuroblastoma and nephroblastoma.


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Pathology - Carcinogenesis
Definition • The series of events culminating in the formation of a malignant tumor.
Aetiology
• Radiation or chemicals that impair DNA, such as sunlight in skin carcinomas and cigarette smoke in lung carcinomas. Chronic inflammatory illnesses that induce sustained cellular proliferation, such as ulcerative colitis, increase the risk of colonic cancer
.• Elevated hormone levels induce the proliferation of hormonally responsive tissues, such as estrogens in breast and endometrial carcinomas. Oncogenic viruses synthesize proteins that facilitate unregulated cell proliferation, such as HPV in cervical cancer. Pathogenesis DNA damage to genes encoding proteins that govern cell division permits uncontrolled cellular proliferation. Genes regulating cell division are categorized into oncogenes and tumor suppressor genes. Oncogenes are mutated genes that facilitate cell division. Mutations typically lead to the overexpression of the gene product or the constitutive activation of the protein product. Examples of oncogenes frequently mutated in malignancies are KIT, RAS, and MYC.
Tumor suppressor genes
• Genes that encode proteins which typically decrease cellular proliferation. • Typically, the inactivation of both alleles is necessary for a tumorigenic impact. Examples of frequently altered tumour suppressor genes in malignancies include P53, CDKN2A, and RB

Metastasis
• The attainment of metastatic capability is a crucial occurrence in the progression of a neoplasm; dissemination to remote locations is a primary factor contributing to the mortality associated with malignant tumors. Malignant neoplasms disseminate through three primary pathways: hematogenous spread to distant organs (e.g., lungs, liver, bone, brain), lymphatic spread to regional lymph nodes (e.g., axillary lymph nodes in breast carcinomas), and transcoelomic spread, wherein malignant tumors adjacent to body cavities, such as the pleura or peritoneum, can infiltrate these spaces and propagate to other organs. Successful metastasis necessitates the malignant cells to surmount several obstacles: detachment from adjacent cells, degradation of the extracellular matrix, invasion of a vessel lumen, endurance in circulation while reaching a distant location, egress from the vessel, and effective implantation and proliferation at the new site.


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Pathology – Microbes
Bacteria • Unicellular entities possessing double-stranded DNA that resides freely in the cytoplasm, encased by a cell membrane and cell wall. • Predominantly thrive in the presence of oxygen (aerobes), however are capable of growth in its absence (facultative anaerobes). Certain organisms proliferate exclusively under anoxic conditions (strict anaerobes). Gram-positive bacteria possess a robust cell wall comprised of peptidoglycan plus an additional polymer, frequently teichoic acid. Gram-negative bacteria possess a weaker peptidoglycan layer, which is covered by an outer lipid membrane consisting of lipopolysaccharide. Mycobacteria are a kind of bacteria characterized by a thick, waxy cell wall that can be stained using the Ziehl–Nielsen method.

Viruses are the smallest and most basic organisms, consisting of genetic material in the form of DNA or RNA encased within a protein shell known as a capsid. Certain viruses possess an external lipid membrane obtained from the host cell in which they originated. • Obligate intracellular entities that proliferate exclusively by infecting a host cell and commandeering its metabolic machinery. • Induce disease by damaging host cells (direct cytopathic effect) or as a result of the immunological response to the infection. • Certain viruses can induce latent infections, such as herpes simplex. • Some viruses are carcinogenic and contribute to the transformation of host cells and the onset of malignancy, for instance, HPV in cervical cancer and EBV in nasopharyngeal carcinoma.

Fungi possess DNA encased within a nucleus, feature a cell membrane that includes ergosterol, and have an external cell wall made of chitin. Yeasts are unicellular fungi that reproduce asexually through budding, such as Candida. • Moulds develop as branching filaments termed hyphae that intertwine to create a complex structure known as mycelium. Mycelia generate spores. • Certain fungi can survive in both yeast and mold forms, such as Histoplasma



Protozoa are unicellular creatures that can inhabit host cells or exist in the extracellular milieu. Intracellular protozoa obtain nourishment from the host cell (e.g., Plasmodium, Leishmania, Toxoplasma). Extracellular protozoa obtain nutrients through direct intake and/or the consumption of sloughed epithelial cells (e.g., Giardia, Trichomonas). Helminths • Complex multicellular parasitic worms that vary in size from tiny entities to colossal animals several meters long. • Numerous species possess intricate life cycles that involve multiple hosts. • Categorized as nematodes (roundworms), cestodes (tapeworms), and trematodes (flukes)


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Pathology- Human Immunodeficiency Virus
Pathogen
• Enveloped RNA virus with a single-stranded, positive-sense genome. • Belongs to the lentivirus genus within the retrovirus family.
Epidemiology
• Prevalent globally, particularly in Sub-Saharan Africa. • Designated as a pandemic by the World Health Organization (WHO).

Transmission
• Primary transmission pathways include unprotected sexual intercourse, infected needles, breast milk, and maternal transmission during childbirth
. • Transmission through transfused blood products has been nearly eradicated due to rigorous donor screening protocols.

Immunopathogenesis
• Infects CD4+ helper T lymphocytes, macrophages, and dendritic cells. • Extensive dissemination of lymphoid tissue transpires post-infection. • HIV-specific CD8+ cytotoxic T-cells initially manage the disease. • Subsequently, HIV evades immunological regulation via antigenic mutation. • Viral load escalates fast while CD4+ numbers decline sharply.
Presentation
• Acute seroconversion induces a flu-like disease characterized by fever, lymphadenopathy, pharyngitis, myalgia, rash, and oral ulcers. The latency phase subsequently ensues, typically remaining asymptomatic. The last phase is characterized by opportunistic infections and/or neoplasm. Common infections encompass bacterial pneumonia,pulmonary tuberculosis,Pneumocystis pneumonia, oesophageal candidiasis, cryptosporidiosis, Mycobacterium avium in the colon,cryptococcal meningitis, and cerebral toxoplasmosis.
Common neoplasms encompass cervical and anal warts, carcinoma, non-Hodgkin B-cell lymphomas, and Kaposi's sarcoma.
Histopathology
• Lymph nodes exhibit pronounced follicular proliferation accompanied by follicle lysis. Lymphomas are typically of the diffuse big B-cell variety.
• The bone marrow exhibits dysplasia characterized by disorganization of hematopoietic lineages and an elevated count of plasma cells.
• The skin may present with eosinophilic folliculitis, indicating infiltration of hair follicles by eosinophils. Cutaneous Kaposi's sarcoma exhibits an erratic proliferation of HHV-8-positive spindle cells inside the dermis, resulting in the formation of slit-like vascular gaps. Pneumocystis pneumonia is characterized by lymphocytic alveolitis accompanied by silver-positive organisms in the alveolar spaces. Prognosis: With contemporary anti-HIV medicine, numerous individuals can anticipate a lifespan approaching normalcy, resulting in death with HIV rather than from it.


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Pathology – Malaria
Malaria
Pathogen
• Plasmodia protozoa: Plasmodium (P.) falciparum, P. vivax, P. ovale, P. malariae.
Epidemiology: Endemic in tropical regions of Africa, Asia, and South America. Approximately 10 million new infections annually. Approximately 1 million fatalities annually, predominantly due to P. falciparum. Transmission • Female Anopheles mosquitoes inject Plasmodium sporozoites during a blood meal.
Pathogenesis
• Sporozoites invade hepatocytes and grow into merozoites. • Merozoites infect and replicate within erythrocytes, resulting in hemolytic anemia. Sequestration of red blood cells significantly infected by P. falciparum results in acute renal failure and cerebral malaria.
Presentation
• A non-specific influenza-like disease characterized initially by headache, malaise, and myalgia. • Subsequently, fevers and chills ensue. Cerebral malaria manifests with confusion, seizures, and coma.

Diagnosis: Parasitized erythrocytes may be observed upon inspection of blood smears. Prognosis: Non-falciparum malaria exhibits a minimal death rate. Severe falciparum malaria can be fatal.
Adverse prognostic indicators encompass elevated parasitaemia, hypoglycaemia, disseminated intravascular coagulation (DIC), and renal dysfunction.


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Pathology - Infectious mononucleosis
Pathogen: Epstein–Barr virus (EBV), a DNA herpesvirus. Epidemiology • The majority of patients are adolescents or young adults. • Absence of gender or racial bias.
• Transmission occurs via saliva or respiratory droplets from an individual infected with EBV.
• Incubation duration of 4–5 weeks.
Mechanism of Disease
Development EBV infects oropharyngeal epithelial cells through the C3d receptor and replicates within these cells. EBV infects B-lymphocytes, causing the linear genome to circularize and survive as an episome.
Viral persistence facilitates continuous multiplication within oropharyngeal epithelial cells and the secretion of infectious particles into saliva. Presentation: sore throat, fever, malaise.
Clinical examination may disclose lymphadenopathy, palatal petechiae, and splenomegaly.
Diagnosis: Lymphocytosis. • The peripheral blood film reveals big atypical cells, which are not specific to EBV. • Ninety percent possess heterophil antibodies (Paul–Bunnell; Monospot test). • EBV-specific IgM antibodies indicate a current infection.
Histopathology
• Lymph nodes and tonsils exhibit significant paracortical growth due to massive lymphoid blasts comprising a mixture of B- and T-cells. The EBV-LMP1 antigen can be identified immunohistochemically in some B-blasts.
Prognosis: In the majority of instances, the condition is self-limiting. • Uncommon consequences encompass meningitis, encephalitis, cranial nerve lesions, Guillain–Barré syndrome, depression, and fatigue.


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Pathology- Adaptive immunity
Immunity mediated by antibodies
• Facilitated by proteins known as antibodies or immunoglobulins. The binding of an antigen to the Fab antigen-binding region reveals the binding sites on the Fc section, which facilitates the functions of the antibody. • Antibodies function through four primary mechanisms: • Inhibit the biological function of an essential microbial molecule, such as a binding protein or toxin. • Identify microorganisms for phagocytosis. • Initiate complement. • Stimulate cytotoxic immune cells. Antibody formation commences upon the binding of an antigen to its specific B-cell receptor on the surface of naïve B-lymphocytes, facilitated by an extra signal from CD4+ helper T-lymphocytes.

Cellular immunity • Primarily facilitated by T-lymphocytes (Fig. 1.3). CD4+ helper T-cells are activated by foreign peptides displayed by class II MHC molecules on specialized antigen-presenting cells, including dendritic cells and macrophages. Activated CD4+ helper T-cells undergo proliferation and produce cytokines that facilitate various immunological responses. Numerous subtypes of helper T-cells are identified based on the cytokines they secrete upon activation, including Th1, Th2, Th3, and Th17. CD8+ cytotoxic T-cells are activated by foreign peptides presented by class I MHC, which is expressed by all nucleated cells. Activated CD8+ cytotoxic T-cells eliminate the presenting host cell by either inducing apoptosis via the Fas ligand or by introducing a membrane pore known as perforin, through which the T-cell delivers proteolytic enzymes.



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Pathology - Inflammation and Healing
Acute inflammation
• A swift, non-specific reaction to cellular damage
. • Coordinated by cytokines generated from damaged cells, such as histamine, serotonin, prostaglandins, leukotrienes, and platelet-activating factor. Cytokines stimulate endothelial cells, resulting in the development of an acute inflammatory exudate including fluid, fibrin, and neutrophils. Severe acute inflammation may result in a localized accumulation of pus within a necrotic cavity (abscess). Acute inflammation may resolve, heal with fibrosis, or advance to chronic inflammation.

Chronic inflammation is a sustained type of inflammation characterized by concurrent tissue damage and attempts at healing.
• May originate from acute inflammation or manifest from the onset.
• Defined by the presence of chronic inflammatory cells, specifically macrophages, lymphocytes, and plasma cells.
• More prone to healing with permanent scarring rather than resolution.
Granulomatous inflammation is a distinct form of chronic inflammation marked by the presence of activated macrophages referred to as epithelioid histiocytes. Collections of epithelioid macrophages are referred to as granulomas. Granulomatous inflammation is linked to foreign substances, chronic infections (such as mycobacteria), and conditions of indeterminate etiology (for instance, sarcoidosis).
Restoration
• The procedure of substituting necrotic and impaired tissue with viable tissue
. • May transpire via regeneration or repair. Regeneration (resolution) substitutes injured cells with identical cell types and represents the optimal outcome. This can only happen if the connective tissue framework is intact and if the tissue possesses regenerative capabilities. Repair initiates with the development of granulation tissue, subsequently transformed into a collagen-dense scar. While the structural integrity is preserved, the functionality of the damaged tissue is compromised.


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